4P2G	Crystal structure of DJ-1 in sulfinic acid form (aged crystal)	date	2014-03-04
authors	Tashiro, S., Wu, C.X., Hoang, Q.Q., Caaveiro, J.M.M., Tsumoto, K.
compound		source
symmetry		R_factor R_Free 0.12012
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.35
ligand	1PE, CSD, EDO	enzyme
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1., Tashiro S, Caaveiro JM, Wu CX, Hoang QQ, Tsumoto K, Biochemistry. 2014 Apr 15;53(14):2218-20. doi: 10.1021/bi500294h. Epub 2014 Apr, 3. PMID:24697266

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (4p2g.pdb1.gz) 138 Kb LPC: Ligand-Protein Contacts for 4P2G CSU: Contacts of Structural Units for 4P2G Structure Factors (3139 Kb) Retrieve 4P2G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4P2G from S2C, [Save to disk] Re-refined 4p2g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4P2G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4P2G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4P2G, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p2g_A] [4p2g] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4P2G

Community annotation for 4P2G at PDBWiki (http://pdbwiki.org)

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