4P2P Carboxylic Ester Hydrolase date Oct 22, 1991
title An Independent Crystallographic Refinement Of Porcine Phosph At 2.4 Angstroms Resolution
authors B.C.Finzel, D.H.Ohlendorf, P.C.Weber, F.R.Salemme
compound source
Molecule: Phospholipase A2
Chain: A
Ec: 3.1.1.4
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.400 69.400 70.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1O2E, 5P2P
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn independent crystallographic refinement of porcine phospholipase A2 at 2.4 A resolution., Finzel BC, Ohlendorf DH, Weber PC, Salemme FR, Acta Crystallogr B 1991 Aug 1;47 ( Pt 4):558-9. PMID:1930837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (4p2p.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4P2P
  • CSU: Contacts of Structural Units for 4P2P
  • Likely Quarternary Molecular Structure file(s) for 4P2P
  • Structure Factors (88 Kb)
  • Retrieve 4P2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P2P from S2C, [Save to disk]
  • Re-refined 4p2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P2P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P2P, from MSDmotif at EBI
  • Genome occurence of 4P2P's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4p2p__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p2p] [4p2p_A]
  • SWISS-PROT database: [P00592]
  • Domain organization of [PA21B_PIG] by SWISSPFAM
  • Domain found in 4P2P: [PA2c ] by SMART
  • Other resources with information on 4P2P
  • Community annotation for 4P2P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 4P2P from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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