4P6J Crystal Structure of the Computationally Designed Transmembrane Metallotransporter with 4-bromophenylalanine in Octyl Glucoside date
authors Joh, N.H., Acharya, R., DeGrado, W.F.
compound source
symmetry
R_factor
R_Free 0.2720
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 4BF, NH2, SO4 enzyme
Primary referenceDe novo design of a transmembrane Zn(2)(+)-transporting four-helix bundle., Joh NH, Wang T, Bhate MP, Acharya R, Wu Y, Grabe M, Hong M, Grigoryan G, DeGrado WF, Science. 2014 Dec 19;346(6216):1520-4. doi: 10.1126/science.1261172. PMID:25525248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (4p6j.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 4P6J
  • CSU: Contacts of Structural Units for 4P6J
  • Structure Factors (22 Kb)
  • Retrieve 4P6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P6J from S2C, [Save to disk]
  • Re-refined 4p6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P6J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P6J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p6j_A] [4p6j] [4p6j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4P6J
  • Community annotation for 4P6J at PDBWiki (http://pdbwiki.org)

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