4P6X Crystal Structure of cortisol-bound glucocorticoid receptor ligand binding domain date
authors He, Y., Zhou, X.E., Tolbert, W.D., Powell, K., Melcher, K., Xu, H.E.
compound source
symmetry
R_factor
R_Free 0.2755
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand HCY enzyme
Primary referenceStructures and mechanism for the design of highly potent glucocorticoids., He Y, Yi W, Suino-Powell K, Zhou XE, Tolbert WD, Tang X, Yang J, Yang H, Shi J, Hou L, Jiang H, Melcher K, Xu HE, Cell Res. 2014 Apr 25. doi: 10.1038/cr.2014.52. PMID:24763108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (4p6x.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (4p6x.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4p6x.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (4p6x.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (4p6x.pdb5.gz) 49 Kb
  • Biological Unit Coordinates (4p6x.pdb6.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4P6X
  • CSU: Contacts of Structural Units for 4P6X
  • Structure Factors (1755 Kb)
  • Retrieve 4P6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P6X from S2C, [Save to disk]
  • Re-refined 4p6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P6X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P6X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p6x] [4p6x_F] [4p6x_B] [4p6x_C] [4p6x_K] [4p6x_D] [4p6x_A] [4p6x_I] [4p6x_J] [4p6x_E] [4p6x_H] [4p6x_G] [4p6x_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P6X: [HOLI ] by SMART
  • Other resources with information on 4P6X
  • Community annotation for 4P6X at PDBWiki (http://pdbwiki.org)

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