4PAL Calcium Binding Protein date Nov 08, 1990
title Ionic Interactions With Parvalbumins. Crystal Structure Determination Of Pike 4.10 Parvalbumin In Four Different Ionic Environments
authors J.P.Declercq, B.Tinant, J.Parello, J.Rambaud
compound source
Molecule: Parvalbumin
Chain: A
Engineered: Yes
Organism_scientific: Esox Lucius
Organism_common: Northern Pike
Organism_taxid: 8010
symmetry Space Group: P 41 21 2
R_factor 0.180 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.500 57.500 87.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACE, CA, MG enzyme
related structures by homologous chain: 1B8R, 2PAL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIonic interactions with parvalbumins. Crystal structure determination of pike 4.10 parvalbumin in four different ionic environments., Declercq JP, Tinant B, Parello J, Rambaud J, J Mol Biol 1991 Aug 20;220(4):1017-39. PMID:1880797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (4pal.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 4PAL
  • CSU: Contacts of Structural Units for 4PAL
  • Likely Quarternary Molecular Structure file(s) for 4PAL
  • Structure Factors (74 Kb)
  • Retrieve 4PAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PAL from S2C, [Save to disk]
  • Re-refined 4pal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PAL, from MSDmotif at EBI
  • Genome occurence of 4PAL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4pal__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pal_A] [4pal]
  • SWISS-PROT database: [P02619]
  • Domain organization of [PRVB_ESOLU] by SWISSPFAM
  • Domain found in 4PAL: [EFh ] by SMART
  • Other resources with information on 4PAL
  • Community annotation for 4PAL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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