4PF3 Mineralocorticoid receptor ligand-binding domain with compuond 37a date
authors Sogabe, S., Habuka, N.
compound source
symmetry
R_factor
R_Free 0.17683
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.10
ligand EDO, HFN enzyme
Primary referenceDiscovery of 6-[5-(4-fluorophenyl)-3-methyl-pyrazol-4-yl]-benzoxazin-3-one derivatives as novel selective nonsteroidal mineralocorticoid receptor antagonists., Hasui T, Ohyabu N, Ohra T, Fuji K, Sugimoto T, Fujimoto J, Asano K, Oosawa M, Shiotani S, Nishigaki N, Kusumoto K, Matsui H, Mizukami A, Habuka N, Sogabe S, Endo S, Ono M, Siedem CS, Tang TP, Gauthier C, De Meese LA, Boyd SA, Fukumoto S, Bioorg Med Chem. 2014 Oct 1;22(19):5428-45. doi: 10.1016/j.bmc.2014.07.038. Epub , 2014 Aug 12. PMID:25187277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4pf3.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 4PF3
  • CSU: Contacts of Structural Units for 4PF3
  • Structure Factors (1914 Kb)
  • Retrieve 4PF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PF3 from S2C, [Save to disk]
  • Re-refined 4pf3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PF3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PF3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pf3_A] [4pf3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PF3: [HOLI ] by SMART
    • Other resources with information on 4PF3
  • Community annotation for 4PF3 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science