4PIR X-ray structure of the mouse serotonin 5-HT3 receptor date
authors Hassaine, G., Deluz, C., Grasso, L., Wyss, R., Tol, M.B., Hovius, R., Graff, A., Stahlberg, H., Tomizaki, T., Desmyter, A., Moreau, C., Li, X.D., Poitevin, F., Vogel, H., Nury, H.
compound source
symmetry
R_factor
R_Free 0.2574
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand BMA, CL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceX-ray structure of the mouse serotonin 5-HT3 receptor., Hassaine G, Deluz C, Grasso L, Wyss R, Tol MB, Hovius R, Graff A, Stahlberg H, Tomizaki T, Desmyter A, Moreau C, Li XD, Poitevin F, Vogel H, Nury H, Nature. 2014 Aug 21;512(7514):276-81. doi: 10.1038/nature13552. Epub 2014 Aug 3. PMID:25119048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (881 Kb) [Save to disk]
  • Biological Unit Coordinates (4pir.pdb1.gz) 870 Kb
  • LPC: Ligand-Protein Contacts for 4PIR
  • CSU: Contacts of Structural Units for 4PIR
  • Structure Factors (730 Kb)
  • Retrieve 4PIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PIR from S2C, [Save to disk]
  • Re-refined 4pir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PIR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PIR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pir_G] [4pir_F] [4pir] [4pir_J] [4pir_B] [4pir_I] [4pir_D] [4pir_H] [4pir_C] [4pir_E] [4pir_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PIR: [IGv ] by SMART
    • Other resources with information on 4PIR
  • Community annotation for 4PIR at PDBWiki (http://pdbwiki.org)

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