4PJ0 Structure of T.elongatus Photosystem II, rows of dimers crystal packing date
authors Hellmich, J., Bommer, M., Burkhardt, A., Ibrahim, M., Kern, J., Meents, A., Mueh, F., Dobbek, H., Zouni, A.
compound source
symmetry
R_factor
R_Free 0.2556
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.44
ligand BCR, BCT, CL, CLA, DGD, FE, HEC, HEM, LHG, LMG, OEX, PHO, PL9, SO4, SQD, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, b


E, e


F, f


H, h


I, i


K, k


L, l


M, m


O, o


T, t


Y, y


Z, z


a, A


c, C


d, D


j, J


r, R


u, U


v, V


x, X


Primary referenceNative-like Photosystem II Superstructure at 2.44 A Resolution through Detergent Extraction from the Protein Crystal., Hellmich J, Bommer M, Burkhardt A, Ibrahim M, Kern J, Meents A, Muh F, Dobbek H, Zouni A, Structure. 2014 Nov 4;22(11):1607-15. doi: 10.1016/j.str.2014.09.007. Epub 2014, Oct 30. PMID:25438669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1063 Kb) [Save to disk]
  • Biological Unit Coordinates (4pj0.pdb1.gz) 997 Kb
  • LPC: Ligand-Protein Contacts for 4PJ0
  • CSU: Contacts of Structural Units for 4PJ0
  • Structure Factors (2291 Kb)
  • Retrieve 4PJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJ0 from S2C, [Save to disk]
  • Re-refined 4pj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PJ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PJ0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pj0] [4pj0_u] [4pj0_D] [4pj0_Y] [4pj0_h] [4pj0_m] [4pj0_f] [4pj0_J] [4pj0_F] [4pj0_E] [4pj0_r] [4pj0_c] [4pj0_k] [4pj0_A] [4pj0_j] [4pj0_y] [4pj0_i] [4pj0_X] [4pj0_o] [4pj0_K] [4pj0_e] [4pj0_v] [4pj0_C] [4pj0_b] [4pj0_x] [4pj0_l] [4pj0_L] [4pj0_t] [4pj0_T] [4pj0_O] [4pj0_U] [4pj0_Z] [4pj0_M] [4pj0_d] [4pj0_z] [4pj0_H] [4pj0_V] [4pj0_R] [4pj0_B] [4pj0_I] [4pj0_a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PJ0
  • Community annotation for 4PJ0 at PDBWiki (http://pdbwiki.org)

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