4PL0 Crystal structure of the antibacterial peptide ABC transporter McjD in an outward occluded state date
authors Choudhury, H.G., Beis, K.
compound source
symmetry
R_factor
R_Free 0.2660
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand ANP, BNG, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of an antibacterial peptide ATP-binding cassette transporter in a novel outward occluded state., Choudhury HG, Tong Z, Mathavan I, Li Y, Iwata S, Zirah S, Rebuffat S, van Veen HW, Beis K, Proc Natl Acad Sci U S A. 2014 Jun 11. pii: 201320506. PMID:24920594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (4pl0.pdb1.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 4PL0
  • CSU: Contacts of Structural Units for 4PL0
  • Structure Factors (2950 Kb)
  • Retrieve 4PL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PL0 from S2C, [Save to disk]
  • Re-refined 4pl0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PL0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PL0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pl0_B] [4pl0] [4pl0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PL0: [AAA ] by SMART
  • Other resources with information on 4PL0
  • Community annotation for 4PL0 at PDBWiki (http://pdbwiki.org)

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