4PP6 Crystal Structure of the Estrogen Receptor alpha Ligand-binding Domain in Complex with Resveratrol date
authors Nwachukwu, J.C., Srinivasan, S., Bruno, N.E., Parent, A.A., Hughes, T.S., Pollock, J.A., Gjyshi, O., Cavett, V., Nowak, J., Garcia-Ordonez, R.D., Houtman, R., Griffin, P.R., Kojetin, D.J., Katzenellenbogen, J.A., Conkright, M.D., Nettles, K.W.
compound source
symmetry
R_factor
R_Free 0.2210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand STL enzyme
Primary referenceResveratrol modulates the inflammatory response via an estrogen receptor-signal integration network., Nwachukwu JC, Srinivasan S, Bruno NE, Parent AA, Hughes TS, Pollock JA, Gjyshi O, Cavett V, Nowak J, Garcia-Ordonez RD, Houtman R, Griffin PR, Kojetin DJ, Katzenellenbogen JA, Conkright MD, Nettles KW, Elife. 2014 Apr 25;3:e02057. doi: 10.7554/eLife.02057. PMID:24771768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (4pp6.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4PP6
  • CSU: Contacts of Structural Units for 4PP6
  • Structure Factors (247 Kb)
  • Retrieve 4PP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PP6 from S2C, [Save to disk]
  • Re-refined 4pp6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PP6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PP6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pp6_C] [4pp6_A] [4pp6] [4pp6_D] [4pp6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PP6: [HOLI ] by SMART
    • Other resources with information on 4PP6
  • Community annotation for 4PP6 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science