4PP7 Highly Potent and Selective 3-N-methylquinazoline-4(3H)-one Based Inhibitors of B-RafV600E Kinase date 2014-02-26
authors Wenglowsky, S., Ren, L., Grina, J., Hansen, J.D., Laird, E.R., Moreno, D., Dinkel, V., Gloor, S.L., Hastings, G., Rana, S., Rasor, K., Sturgis, H.L., Voegtli, W.C., Vigers, G.P.A., Willis, B., Mathieu, S., Rudolph, J.
compound source
symmetry
R_factor
R_Free 0.25444
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand 2VX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHighly potent and selective 3-N-methylquinazoline-4(3H)-one based inhibitors of B-Raf(V600E) kinase., Wenglowsky S, Ren L, Grina J, Hansen JD, Laird ER, Moreno D, Dinkel V, Gloor SL, Hastings G, Rana S, Rasor K, Sturgis HL, Voegtli WC, Vigers G, Willis B, Mathieu S, Rudolph J, Bioorg Med Chem Lett. 2014 Apr 15;24(8):1923-7. doi: 10.1016/j.bmcl.2014.03.007. , Epub 2014 Mar 13. PMID:24675381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4pp7.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4pp7.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4PP7
  • CSU: Contacts of Structural Units for 4PP7
  • Structure Factors (248 Kb)
  • Retrieve 4PP7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PP7 from S2C, [Save to disk]
  • Re-refined 4pp7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PP7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PP7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PP7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pp7] [4pp7_B] [4pp7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PP7: [STYKc ] by SMART
    • Other resources with information on 4PP7
  • Community annotation for 4PP7 at PDBWiki (http://pdbwiki.org)

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