4PPC ITK kinase domain with compound 27 (N-{1-[(1R)-3-(DIMETHYLAMINO)-1-PHENYLPROPYL]-1H-PYRAZOL-4-YL}-6-(1H-PYRAZOL-4-YL)-1H-INDAZOLE-3-CARBOXAMIDE) date
authors Eigenbrot, C., Shia, S.
compound source
symmetry
R_factor
R_Free 0.2568
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.95
ligand 2VW enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery and optimization of indazoles as potent and selective interleukin-2 inducible T cell kinase (ITK) inhibitors., Pastor RM, Burch JD, Magnuson S, Ortwine DF, Chen Y, De La Torre K, Ding X, Eigenbrot C, Johnson A, Liimatta M, Liu Y, Shia S, Wang X, Wu LC, Pei Z, Bioorg Med Chem Lett. 2014 Jun 1;24(11):2448-52. doi: 10.1016/j.bmcl.2014.04.023., Epub 2014 Apr 16. PMID:24767842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4ppc.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (4ppc.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (4ppc.pdb3.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4PPC
  • CSU: Contacts of Structural Units for 4PPC
  • Structure Factors (145 Kb)
  • Retrieve 4PPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PPC from S2C, [Save to disk]
  • Re-refined 4ppc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PPC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PPC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ppc] [4ppc_B] [4ppc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PPC: [TyrKc ] by SMART
    • Other resources with information on 4PPC
  • Community annotation for 4PPC at PDBWiki (http://pdbwiki.org)

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