4PRP Crystal structure of TK3 TCR-HLA-B*35:01-HPVG-Q5 complex date
authors Chih, L.Yu., Rossjohn, J., Gras, S.
compound source
symmetry
R_factor
R_Free 0.2287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
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    • Primary referenceA Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism., Liu YC, Chen Z, Neller MA, Miles JJ, Purcell AW, McCluskey J, Burrows SR, Rossjohn J, Gras S, J Biol Chem. 2014 Jun 13;289(24):16688-16698. Epub 2014 Apr 23. PMID:24759101
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (4prp.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 4PRP
  • CSU: Contacts of Structural Units for 4PRP
  • Structure Factors (1702 Kb)
  • Retrieve 4PRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PRP from S2C, [Save to disk]
  • Re-refined 4prp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PRP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PRP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4prp_C] [4prp_B] [4prp_D] [4prp] [4prp_E] [4prp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PRP: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4PRP
  • Community annotation for 4PRP at PDBWiki (http://pdbwiki.org)

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