4PXZ Crystal structure of P2Y12 receptor in complex with 2MeSADP date
authors Zhang, J., Zhang, K., Gao, Z.G., Paoletta, S., Zhang, D., Han, G.W., Li, T., Ma, L., Zhang, W., Muller, C.E., Yang, H., Jiang, H., Cherezov, V., Katritch, V., Jacobson, K.A., Stevens, R.C., Wu, B., Zhao, Q., GPCR, GPCR.Network.
compound source
symmetry
R_factor
R_Free 0.2297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 6AD, CLR, OLC, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAgonist-bound structure of the human P2Y12 receptor., Zhang J, Zhang K, Gao ZG, Paoletta S, Zhang D, Han GW, Li T, Ma L, Zhang W, Muller CE, Yang H, Jiang H, Cherezov V, Katritch V, Jacobson KA, Stevens RC, Wu B, Zhao Q, Nature. 2014 May 1;509(7498):119-22. doi: 10.1038/nature13288. PMID:24784220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4pxz.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 4PXZ
  • CSU: Contacts of Structural Units for 4PXZ
  • Structure Factors (483 Kb)
  • Retrieve 4PXZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PXZ from S2C, [Save to disk]
  • Re-refined 4pxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PXZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PXZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PXZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pxz] [4pxz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PXZ
  • Community annotation for 4PXZ at PDBWiki (http://pdbwiki.org)

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