4PYP Crystal structure of the human glucose transporter GLUT1 date
authors Deng, D., Yan, C.Y., Xu, C., Wu, J.P., Sun, P.C., Hu, M.X., Yan, N.
compound source
symmetry
R_factor
R_Free 0.2776
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.17
ligand BNG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the human glucose transporter GLUT1., Deng D, Xu C, Sun P, Wu J, Yan C, Hu M, Yan N, Nature. 2014 Jun 5;510(7503):121-5. doi: 10.1038/nature13306. Epub 2014 May 18. PMID:24847886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4pyp.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 4PYP
  • CSU: Contacts of Structural Units for 4PYP
  • Structure Factors (230 Kb)
  • Retrieve 4PYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PYP from S2C, [Save to disk]
  • Re-refined 4pyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PYP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PYP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pyp] [4pyp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PYP
  • Community annotation for 4PYP at PDBWiki (http://pdbwiki.org)

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