4Q8Z Crystal structure of 1-hydroxy-4-methylpyridin-2(1H)-one bound to human carbonic anhydrase II date
authors Martin, D.P., Cohen, S.M.
compound source
symmetry
R_factor
R_Free 0.17681
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand 4HO, MBO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExploring the influence of the protein environment on metal-binding pharmacophores., Martin DP, Blachly PG, McCammon JA, Cohen SM, J Med Chem. 2014 Aug 28;57(16):7126-35. doi: 10.1021/jm500984b. Epub 2014 Aug 19. PMID:25116076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4q8z.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4Q8Z
  • CSU: Contacts of Structural Units for 4Q8Z
  • Structure Factors (710 Kb)
  • Retrieve 4Q8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q8Z from S2C, [Save to disk]
  • Re-refined 4q8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q8Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q8Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q8z_A] [4q8z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Q8Z: [Carb_anhydrase ] by SMART
  • Other resources with information on 4Q8Z
  • Community annotation for 4Q8Z at PDBWiki (http://pdbwiki.org)

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