4QLC Crystal structure of chromatosome at 3.5 angstrom resolution date
authors Jiang, J.S., Zhou, B.R., Xiao, T.S., Bai, Y.W.
compound source
symmetry
R_factor
R_Free 0.2435
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand CIT enzyme
Genes H2A, H2B, H3, H4 (D. melanogaster); H5 (G. gallus)
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


U


Primary referenceStructural Mechanisms of Nucleosome Recognition by Linker Histones., Zhou BR, Jiang J, Feng H, Ghirlando R, Xiao TS, Bai Y, Mol Cell. 2015 Jul 22. pii: S1097-2765(15)00497-9. doi:, 10.1016/j.molcel.2015.06.025. PMID:26212454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (4qlc.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 4QLC
  • CSU: Contacts of Structural Units for 4QLC
  • Structure Factors (839 Kb)
  • Retrieve 4QLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QLC from S2C, [Save to disk]
  • Re-refined 4qlc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QLC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qlc_C] [4qlc] [4qlc_E] [4qlc_G] [4qlc_J] [4qlc_U] [4qlc_I] [4qlc_D] [4qlc_F] [4qlc_H] [4qlc_A] [4qlc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QLC: [H15] [H2A] [H2B] [H3] [H4 ] by SMART
    • Other resources with information on 4QLC
  • Community annotation for 4QLC at PDBWiki (http://pdbwiki.org)

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