4QO2 Crystal structure of rhomboid intramembrane protease GlpG in complex with peptide derived inhibitor Ac-IATA-cmk date
authors Zoll, S., Strisovsky, K.
compound source
symmetry
R_factor
R_Free 0.18011
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 0QE, ACE, BNG, CL enzyme
Gene BN896
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate binding and specificity of rhomboid intramembrane protease revealed by substrate-peptide complex structures., Zoll S, Stanchev S, Began J, Skerle J, Lepsik M, Peclinovska L, Majer P, Strisovsky K, EMBO J. 2014 Sep 12. pii: e201489367. PMID:25216680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4qo2.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4QO2
  • CSU: Contacts of Structural Units for 4QO2
  • Structure Factors (326 Kb)
  • Retrieve 4QO2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QO2 from S2C, [Save to disk]
  • Re-refined 4qo2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QO2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QO2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QO2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qo2] [4qo2_B] [4qo2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QO2
  • Community annotation for 4QO2 at PDBWiki (http://pdbwiki.org)

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