4QOC crystal structure of compound 16 bound to MDM2(17-111), {(3R,5R,6S)-5-(3-CHLOROPHENYL)-6-(4-CHLOROPHENYL)-1-[(1S)-1-CYCLOPROPYL-2-(PYRROLIDIN-1-YLSULFONYL)ETHYL]-3-METHYL-2-OXOPIPERIDIN-3-YL}ACETIC ACID date
authors Huang, X.
compound source
symmetry
R_factor
R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 35T enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, K, I, G, E


Primary referenceOptimization beyond AMG 232: discovery and SAR of sulfonamides on a piperidinone scaffold as potent inhibitors of the MDM2-p53 protein-protein interaction., Wang Y, Zhu J, Liu JJ, Chen X, Mihalic J, Deignan J, Yu M, Sun D, Kayser F, McGee LR, Lo MC, Chen A, Zhou J, Ye Q, Huang X, Long AM, Yakowec P, Oliner JD, Olson SH, Medina JC, Bioorg Med Chem Lett. 2014 Aug 15;24(16):3782-5. doi: 10.1016/j.bmcl.2014.06.073., Epub 2014 Jul 1. PMID:25042256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4qoc.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (4qoc.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (4qoc.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (4qoc.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (4qoc.pdb5.gz) 20 Kb
  • Biological Unit Coordinates (4qoc.pdb6.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 4QOC
  • CSU: Contacts of Structural Units for 4QOC
  • Structure Factors (533 Kb)
  • Retrieve 4QOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QOC from S2C, [Save to disk]
  • Re-refined 4qoc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QOC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QOC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qoc_K] [4qoc_E] [4qoc_I] [4qoc_G] [4qoc_A] [4qoc_C] [4qoc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QOC
  • Community annotation for 4QOC at PDBWiki (http://pdbwiki.org)

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