4QYD Crystal Structure of the human BRPF1 bromodomain in complex with a histone H4K12ac peptide date
authors Lubula, M.Y., Glass, K.C.
compound source
symmetry
R_factor
R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.94
ligand ALY enzyme
Primary referenceStructural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain., Lubula MY, Eckenroth BE, Carlson S, Poplawski A, Chruszcz M, Glass KC, FEBS Lett. 2014 Sep 30. pii: S0014-5793(14)00705-4. doi:, 10.1016/j.febslet.2014.09.028. PMID:25281266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyd.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4QYD
  • CSU: Contacts of Structural Units for 4QYD
  • Structure Factors (979 Kb)
  • Retrieve 4QYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYD from S2C, [Save to disk]
  • Re-refined 4qyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QYD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QYD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyd] [4qyd_A] [4qyd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QYD: [BROMO ] by SMART
  • Other resources with information on 4QYD
  • Community annotation for 4QYD at PDBWiki (http://pdbwiki.org)

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