4QZD Mouse Tdt, F405A mutant, in complex with a DSB substrate, C-C base pair date
authors Gouge, J., Delarue, M.
compound source
symmetry
R_factor
R_Free 0.2452
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand DCT, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair., Gouge J, Rosario S, Romain F, Poitevin F, Beguin P, Delarue M, EMBO J. 2015 Apr 15;34(8):1126-42. doi: 10.15252/embj.201489643. Epub 2015 Mar, 11. PMID:25762590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (4qzd.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4QZD
  • CSU: Contacts of Structural Units for 4QZD
  • Structure Factors (776 Kb)
  • Retrieve 4QZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QZD from S2C, [Save to disk]
  • Re-refined 4qzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QZD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QZD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qzd] [4qzd_U] [4qzd_D] [4qzd_T] [4qzd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QZD: [POLXc ] by SMART
    • Other resources with information on 4QZD
  • Community annotation for 4QZD at PDBWiki (http://pdbwiki.org)

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