4R1Z Zebra fish cytochrome P450 17A1 with Abiraterone date
authors Pallan, P.S., Egli, M.
compound source
symmetry
R_factor
R_Free 0.23824
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand AER, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Kinetic Basis of Steroid 17alpha,20-Lyase Activity in Teleost Fish Cytochrome P450 17A1 and Its Absence in Cytochrome P450 17A2., Pallan PS, Nagy LD, Lei L, Gonzalez E, Kramlinger VM, Azumaya CM, Wawrzak Z, Waterman MR, Guengerich FP, Egli M, J Biol Chem. 2015 Feb 6;290(6):3248-68. doi: 10.1074/jbc.M114.627265. Epub 2014, Dec 22. PMID:25533464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (4r1z.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (4r1z.pdb2.gz) 142 Kb
  • Biological Unit Coordinates (4r1z.pdb3.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 4R1Z
  • CSU: Contacts of Structural Units for 4R1Z
  • Structure Factors (368 Kb)
  • Retrieve 4R1Z in mmCIF format [Save to disk]
  • Re-refined 4r1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R1Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R1Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r1z_A] [4r1z] [4r1z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4R1Z
  • Community annotation for 4R1Z at PDBWiki (http://pdbwiki.org)

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