4R67 Human constitutive 20S proteasome in complex with carfilzomib date
authors Sacchettini, J.C., Harshbarger, W.H.
compound source
symmetry
R_factor
R_Free 0.2451
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand 3BV enzyme
Gene
Ontology
ChainFunctionProcessComponent
G, U, w, i


J, z, X, l


K, Y, 0, m


N, 2, b, p


S, E, u, g


T, v, F, h


Z, L, n, 3


a, 1, M, o


c, q, A, O
  • positive regulation of NF-ka...

  • d, B, r, P


    e, s, Q, C


    j, y, k, W, H, I, x, V


    t, D, f, R


    Primary referenceCrystal Structure of the Human 20S Proteasome in Complex with Carfilzomib., Harshbarger W, Miller C, Diedrich C, Sacchettini J, Structure. 2015 Feb 3;23(2):418-24. doi: 10.1016/j.str.2014.11.017. Epub 2015 Jan, 15. PMID:25599644
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1971 Kb) [Save to disk]
  • Biological Unit Coordinates (4r67.pdb1.gz) 993 Kb
  • Biological Unit Coordinates (4r67.pdb2.gz) 990 Kb
  • LPC: Ligand-Protein Contacts for 4R67
  • CSU: Contacts of Structural Units for 4R67
  • Structure Factors (5277 Kb)
  • Retrieve 4R67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R67 from S2C, [Save to disk]
  • Re-refined 4r67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R67, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r67_O] [4r67_S] [4r67_W] [4r67_y] [4r67_l] [4r67_t] [4r67_h] [4r67_Z] [4r67_P] [4r67_U] [4r67_C] [4r67_Q] [4r67_f] [4r67_M] [4r67_d] [4r67_o] [4r67_J] [4r67_p] [4r67_K] [4r67] [4r67_E] [4r67_N] [4r67_1] [4r67_u] [4r67_R] [4r67_L] [4r67_F] [4r67_r] [4r67_I] [4r67_a] [4r67_j] [4r67_q] [4r67_X] [4r67_2] [4r67_n] [4r67_V] [4r67_D] [4r67_T] [4r67_k] [4r67_H] [4r67_c] [4r67_G] [4r67_b] [4r67_i] [4r67_e] [4r67_B] [4r67_s] [4r67_v] [4r67_0] [4r67_A] [4r67_x] [4r67_m] [4r67_z] [4r67_Y] [4r67_3] [4r67_w] [4r67_g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R67: [Proteasome_A_N ] by SMART
  • Other resources with information on 4R67
  • Community annotation for 4R67 at PDBWiki (http://pdbwiki.org)

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