4R7H Crystal structure of FMS KINASE domain with a small molecular inhibitor, PLX3397 date
authors Zhang, Y., Zhang, K., Zhang, C.
compound source
symmetry
R_factor
R_Free 0.2481
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand P31 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-Guided Blockade of CSF1R Kinase in Tenosynovial Giant-Cell Tumor., Tap WD, Wainberg ZA, Anthony SP, Ibrahim PN, Zhang C, Healey JH, Chmielowski B, Staddon AP, Cohn AL, Shapiro GI, Keedy VL, Singh AS, Puzanov I, Kwak EL, Wagner AJ, Von Hoff DD, Weiss GJ, Ramanathan RK, Zhang J, Habets G, Zhang Y, Burton EA, Visor G, Sanftner L, Severson P, Nguyen H, Kim MJ, Marimuthu A, Tsang G, Shellooe R, Gee C, West BL, Hirth P, Nolop K, van de Rijn M, Hsu HH, Peterfy C, Lin PS, Tong-Starksen S, Bollag G, N Engl J Med. 2015 Jul 30;373(5):428-37. doi: 10.1056/NEJMoa1411366. PMID:26222558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4r7h.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4r7h.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4R7H
  • CSU: Contacts of Structural Units for 4R7H
  • Structure Factors (159 Kb)
  • Retrieve 4R7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R7H from S2C, [Save to disk]
  • Re-refined 4r7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r7h_A] [4r7h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R7H: [TyrKc ] by SMART
  • Other resources with information on 4R7H
  • Community annotation for 4R7H at PDBWiki (http://pdbwiki.org)

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