4RES Crystal structure of the Na,K-ATPase E2P-bufalin complex with bound potassium date
authors Laursen, M., Yatime, L., Gregersen, J.L., Nissen, P., Fedosova, N.U.
compound source
symmetry
R_factor
R_Free 0.2882
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.41
ligand 17F, BUF, CLR, FRU, GLC, K, MG, NAG, PHD enzyme
note 4RES supersedes 3N2F
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B
  • sodium ion export across pla...

  • G, E


    Primary referenceStructures and characterization of digoxin- and bufalin-bound Na+,K+-ATPase compared with the ouabain-bound complex., Laursen M, Gregersen JL, Yatime L, Nissen P, Fedosova NU, Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):1755-60. doi:, 10.1073/pnas.1422997112. Epub 2015 Jan 26. PMID:25624492
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (896 Kb) [Save to disk]
  • Biological Unit Coordinates (4res.pdb1.gz) 446 Kb
  • Biological Unit Coordinates (4res.pdb2.gz) 447 Kb
  • LPC: Ligand-Protein Contacts for 4RES
  • CSU: Contacts of Structural Units for 4RES
  • Structure Factors (669 Kb)
  • Retrieve 4RES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RES from S2C, [Save to disk]
  • Re-refined 4res structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RES
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RES, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4res_G] [4res_C] [4res_A] [4res_E] [4res_B] [4res] [4res_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RES: [Cation_ATPase_N ] by SMART
  • Other resources with information on 4RES
  • Community annotation for 4RES at PDBWiki (http://pdbwiki.org)

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