4RFW	Transcription	date	Sep 28, 2014
title	Crystal Structure Of Human Retinoid X Receptor Alpha-Ligand Domain Complex With 9cuab70 And The Coactivator Peptide Gri
authors	G.Xia, D.D.Muccio, C.D.Smith
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Ligand Binding Domain Residues 228-458 Synonym: Nuclear Receptor Subfamily 2 Group B Member 1, Ret Receptor Alpha; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr2b1, Rxra, Rxra Nr2b1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_vector_type: Bl21(De3)
Molecule: Nuclear Receptor Coactivator 2 Chain: G Fragment: Coactivator Peptide Lxxll Motif 2, Residues 686-6 Synonym: Ncoa-2, Class E Basic Helix-Loop-Helix Protein 75, Transcriptional Intermediary Factor 2, Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 43 21 2	R_factor 0.211 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.390 66.390 111.810 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	3RB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers., Atigadda VR, Xia G, Deshpande A, Wu L, Kedishvili N, Smith CD, Krontiras H, Bland KI, Grubbs CJ, Brouillette WJ, Muccio DD, J Med Chem. 2015 Oct 8;58(19):7763-74. doi: 10.1021/acs.jmedchem.5b00829. Epub, 2015 Sep 22. PMID:26331194

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (4rfw.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 4RFW CSU: Contacts of Structural Units for 4RFW Structure Factors (147 Kb) Retrieve 4RFW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4RFW from S2C, [Save to disk] Re-refined 4rfw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RFW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RFW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rfw_A] [4rfw] [4rfw_G] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4RFW: [HOLI ] by SMART

Other resources with information on 4RFW

Community annotation for 4RFW at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---