4RFZ Crystal structure of BTK kinase domain complexed with 6-(dimethylamino)-8-fluoro-2-[2-(hydroxymethyl)-3-[1-methyl-5-[[5-(morpholine-4-carbonyl)-2-pyridyl]amino]-6-oxo-3-pyridyl]phenyl]isoquinolin-1-one date
authors Kuglstatter, A., Wong, A.
compound source
symmetry
R_factor
R_Free 0.18357
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.17
ligand 3OV, DMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFinding the perfect spot for fluorine: Improving potency up to 40-fold during a rational fluorine scan of a Bruton's Tyrosine Kinase (BTK) inhibitor scaffold., Lou Y, Sweeney ZK, Kuglstatter A, Davis D, Goldstein DM, Han X, Hong J, Kocer B, Kondru RK, Litman R, McIntosh J, Sarma K, Suh J, Taygerly J, Owens TD, Bioorg Med Chem Lett. 2014 Nov 20. pii: S0960-894X(14)01214-1. doi:, 10.1016/j.bmcl.2014.11.030. PMID:25466710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4rfz.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4RFZ
  • CSU: Contacts of Structural Units for 4RFZ
  • Structure Factors (1491 Kb)
  • Retrieve 4RFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RFZ from S2C, [Save to disk]
  • Re-refined 4rfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RFZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RFZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rfz] [4rfz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RFZ: [TyrKc ] by SMART
    • Other resources with information on 4RFZ
  • Community annotation for 4RFZ at PDBWiki (http://pdbwiki.org)

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