4RG0 Crystal structure of BTK kinase domain complexed with 2-[8-fluoro-2-[2-(hydroxymethyl)-3-[1-methyl-5-[[5-(4-methylpiperazin-1-yl)-2-pyridyl]amino]-6-oxo-3-pyridyl]phenyl]-1-oxo-3,4-dihydroisoquinolin-6-yl]-2-methyl-propanenitrile date
authors Kuglstatter, A., Wong, A.
compound source
symmetry
R_factor
R_Free 0.28223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 3P0 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFinding the perfect spot for fluorine: Improving potency up to 40-fold during a rational fluorine scan of a Bruton's Tyrosine Kinase (BTK) inhibitor scaffold., Lou Y, Sweeney ZK, Kuglstatter A, Davis D, Goldstein DM, Han X, Hong J, Kocer B, Kondru RK, Litman R, McIntosh J, Sarma K, Suh J, Taygerly J, Owens TD, Bioorg Med Chem Lett. 2014 Nov 20. pii: S0960-894X(14)01214-1. doi:, 10.1016/j.bmcl.2014.11.030. PMID:25466710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4rg0.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4RG0
  • CSU: Contacts of Structural Units for 4RG0
  • Structure Factors (162 Kb)
  • Retrieve 4RG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RG0 from S2C, [Save to disk]
  • Re-refined 4rg0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RG0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RG0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rg0] [4rg0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RG0: [TyrKc ] by SMART
  • Other resources with information on 4RG0
  • Community annotation for 4RG0 at PDBWiki (http://pdbwiki.org)

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