4RQI Structure of TRF2/RAP1 secondary interaction binding site date
authors Miron, S., Guimaraes, B., Gaullier, G., Giraud-Panis, M.J., Gilson, E., Du, M.H.Le.
compound source
symmetry
R_factor
R_Free 0.2406
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.44
ligand GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA higher-order entity formed by the flexible assembly of RAP1 with TRF2., Gaullier G, Miron S, Pisano S, Buisson R, Le Bihan YV, Tellier-Lebegue C, Messaoud W, Roblin P, Guimaraes BG, Thai R, Giraud-Panis MJ, Gilson E, Le Du MH, Nucleic Acids Res. 2016 Jan 8. pii: gkv1531. PMID:26748096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (4rqi.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4rqi.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4RQI
  • CSU: Contacts of Structural Units for 4RQI
  • Structure Factors (810 Kb)
  • Retrieve 4RQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RQI from S2C, [Save to disk]
  • Re-refined 4rqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RQI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rqi_H] [4rqi_F] [4rqi] [4rqi_G] [4rqi_C] [4rqi_B] [4rqi_E] [4rqi_A] [4rqi_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RQI
  • Community annotation for 4RQI at PDBWiki (http://pdbwiki.org)

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