4RQX Crystal structure of human peroxiredoxin 4(THIOREDOXIN PEROXIDASE) with MESNA date
authors Badger, J., Sridhar, V., Logan, C., Hausheer, F.H., Nienaber, V.L.
compound source
symmetry
R_factor
R_Free 0.24951
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.26
ligand COM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCysteine Specific Targeting of the Functionally Distinct Peroxiredoxin and Glutaredoxin Proteins by the Investigational Disulfide BNP7787., Parker AR, Petluru PN, Nienaber VL, Badger J, Leverett BD, Jair K, Sridhar V, Logan C, Ayala PY, Kochat H, Hausheer FH, Molecules. 2015 Mar 18;20(3):4928-50. doi: 10.3390/molecules20034928. PMID:25793542
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (4rqx.pdb1.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 4RQX
  • CSU: Contacts of Structural Units for 4RQX
  • Structure Factors (695 Kb)
  • Retrieve 4RQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RQX from S2C, [Save to disk]
  • Re-refined 4rqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RQX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RQX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rqx_E] [4rqx_D] [4rqx_A] [4rqx_C] [4rqx] [4rqx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RQX
  • Community annotation for 4RQX at PDBWiki (http://pdbwiki.org)

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