4STD HIGH RESOLUTION STRUCTURES OF SCYTALONE DEHYDRATASE-INHIBITOR COMPLEXES CRYSTALLIZED AT PHYSIOLOGICAL PH date
authors Wawrzak, Z., Sandalova, T., Steffens, J.J., Basarab, G.S., Lundqvist, T., Lindqvist, Y., Jordan, D.B.
compound source
symmetry
R_factor
R_Free 0.2780000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand BFS BindingDB enzyme
related structures by homologous chain: 1STD, 2STD
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceHigh-resolution structures of scytalone dehydratase-inhibitor complexes crystallized at physiological pH., Wawrzak Z, Sandalova T, Steffens JJ, Basarab GS, Lundqvist T, Lindqvist Y, Jordan DB, Proteins 1999 Jun 1;35(4):425-39. PMID:10382670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4std.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4STD
  • CSU: Contacts of Structural Units for 4STD
  • Likely Quarternary Molecular Structure file(s) for 4STD
  • Retrieve 4STD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4STD from S2C, [Save to disk]
  • View 4STD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4STD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4STD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4stda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d4stdb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d4stdc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4std_A] [4std_C] [4std] [4std_B]
  • SWISS-PROT database: [P56221]
  • Domain organization of [SCYD_MAGGR] by SWISSPFAM
  • Other resources with information on 4STD
  • Community annotation for 4STD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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