4TKR Native-SAD phasing for ThiT from Listeria monocytogenes serovar. date
authors Guo, Y., Liu, Q., Hendrickson, W.A., NYCOMPS, New.York.Consortium.on.Membrane.Protein.Structure.
compound source
symmetry
R_factor
R_Free 0.2343
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand BGL, TPP enzyme
Gene M637 ; M638 ; M640 ; M641 ; M643 ; M644 ; M645
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • thiamine transmembrane trans...


    • Primary referenceMulti-crystal native SAD analysis at 6 keV., Liu Q, Guo Y, Chang Y, Cai Z, Assur Z, Mancia F, Greene MI, Hendrickson WA, Acta Crystallogr D Biol Crystallogr. 2014 Oct 1;70(Pt 10):2544-57. doi:, 10.1107/S1399004714013376. Epub 2014 Sep 30. PMID:25286840
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4tkr.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4TKR
  • CSU: Contacts of Structural Units for 4TKR
  • Structure Factors (321 Kb)
  • Retrieve 4TKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TKR from S2C, [Save to disk]
  • Re-refined 4tkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TKR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TKR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tkr_A] [4tkr] [4tkr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TKR
  • Community annotation for 4TKR at PDBWiki (http://pdbwiki.org)

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