4TLV CARDS TOXIN, NICKED date
authors Taylor, A.B., Pakhomova, O.N., Hart, P.J.
compound source
symmetry
R_factor
R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand ACT, GOL, SO4 enzyme
Gene MPN
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure of CARDS toxin, a unique ADP-ribosylating and vacuolating cytotoxin from Mycoplasma pneumoniae., Becker A, Kannan TR, Taylor AB, Pakhomova ON, Zhang Y, Somarajan SR, Galaleldeen A, Holloway SP, Baseman JB, Hart PJ, Proc Natl Acad Sci U S A. 2015 Apr 6. pii: 201420308. PMID:25848012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (608 Kb) [Save to disk]
  • Biological Unit Coordinates (4tlv.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (4tlv.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (4tlv.pdb3.gz) 108 Kb
  • Biological Unit Coordinates (4tlv.pdb4.gz) 108 Kb
  • Biological Unit Coordinates (4tlv.pdb5.gz) 109 Kb
  • Biological Unit Coordinates (4tlv.pdb6.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4TLV
  • CSU: Contacts of Structural Units for 4TLV
  • Structure Factors (5403 Kb)
  • Retrieve 4TLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TLV from S2C, [Save to disk]
  • Re-refined 4tlv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TLV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TLV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tlv_E] [4tlv_D] [4tlv_F] [4tlv] [4tlv_B] [4tlv_A] [4tlv_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TLV
  • Community annotation for 4TLV at PDBWiki (http://pdbwiki.org)

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