4TMP	Crystal structure of AF9 YEATS bound to H3K9ac peptide	date
authors	Li, H., Li, Y., Wang, H., Ren, Y.
compound		source
symmetry		R_factor R_Free 0.2288
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	ALY, EDO	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	AF9 YEATS Domain Links Histone Acetylation to DOT1L-Mediated H3K79 Methylation., Li Y, Wen H, Xi Y, Tanaka K, Wang H, Peng D, Ren Y, Jin Q, Dent SY, Li W, Li H, Shi X, Cell. 2014 Oct 23;159(3):558-71. doi: 10.1016/j.cell.2014.09.049. PMID:25417107

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (4tmp.pdb1.gz) 49 Kb Biological Unit Coordinates (4tmp.pdb2.gz) 51 Kb LPC: Ligand-Protein Contacts for 4TMP CSU: Contacts of Structural Units for 4TMP Structure Factors (442 Kb) Retrieve 4TMP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4TMP from S2C, [Save to disk] Re-refined 4tmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4TMP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4TMP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4TMP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4tmp_B] [4tmp_C] [4tmp_A] [4tmp_D] [4tmp] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4TMP

Community annotation for 4TMP at PDBWiki (http://pdbwiki.org)

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