4U7D Structure of human RECQ-like helicase in complex with an oligonucleotide date
authors Pike, A.C.W., Zhang, Y., Schnecke, C., Cooper, C.D.O., Delft, F.von., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2486
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHuman RECQ1 helicase-driven DNA unwinding, annealing, and branch migration: Insights from DNA complex structures., Pike AC, Gomathinayagam S, Swuec P, Berti M, Zhang Y, Schnecke C, Marino F, von Delft F, Renault L, Costa A, Gileadi O, Vindigni A, Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4286-91. doi:, 10.1073/pnas.1417594112. Epub 2015 Mar 23. PMID:25831490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (731 Kb) [Save to disk]
  • Biological Unit Coordinates (4u7d.pdb1.gz) 367 Kb
  • Biological Unit Coordinates (4u7d.pdb2.gz) 361 Kb
  • Biological Unit Coordinates (4u7d.pdb3.gz) 360 Kb
  • LPC: Ligand-Protein Contacts for 4U7D
  • CSU: Contacts of Structural Units for 4U7D
  • Structure Factors (2421 Kb)
  • Retrieve 4U7D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U7D from S2C, [Save to disk]
  • Re-refined 4u7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U7D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U7D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U7D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u7d_P] [4u7d_D] [4u7d_A] [4u7d_C] [4u7d_S] [4u7d_B] [4u7d_R] [4u7d_Q] [4u7d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4U7D: [DEXDc] [HELICc ] by SMART
  • Other resources with information on 4U7D
  • Community annotation for 4U7D at PDBWiki (http://pdbwiki.org)

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