4UF9 Electron cryo-microscopy structure of PB1-p62 type T filaments date
authors Ciuffa, R., Lamark, T., Tarafder, A., Guesdon, A., Rybina, S., Hagen, W.J.H., Johansen, T., Sachse, C.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 10.30
Primary referenceThe Selective Autophagy Receptor p62 Forms a Flexible Filamentous Helical Scaffold., Ciuffa R, Lamark T, Tarafder AK, Guesdon A, Rybina S, Hagen WJ, Johansen T, Sachse C, Cell Rep. 2015 May 5;11(5):748-58. doi: 10.1016/j.celrep.2015.03.062. Epub 2015, Apr 23. PMID:25921531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4uf9.pdb1.gz) 824 Kb
  • CSU: Contacts of Structural Units for 4UF9
  • Retrieve 4UF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UF9 from S2C, [Save to disk]
  • View 4UF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UF9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UF9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uf9_B] [4uf9_A] [4uf9] [4uf9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UF9: [PB1 ] by SMART
  • Other resources with information on 4UF9
  • Community annotation for 4UF9 at PDBWiki (http://pdbwiki.org)

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