4UM9 Crystal structure of alpha V beta 6 with peptide date
authors Dong, X., Springer, T.A.
compound source
symmetry
R_factor
R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand ACE, BMA, CA, MAN, MG, NAG, NH2, NHH, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural determinants of integrin beta-subunit specificity for latent TGF-beta, Dong X, Hudson NE, Lu C, Springer TA, Nat Struct Mol Biol. 2014 Nov 10. doi: 10.1038/nsmb.2905. PMID:25383667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk]
  • Biological Unit Coordinates (4um9.pdb1.gz) 312 Kb
  • Biological Unit Coordinates (4um9.pdb2.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 4UM9
  • CSU: Contacts of Structural Units for 4UM9
  • Structure Factors (896 Kb)
  • Retrieve 4UM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UM9 from S2C, [Save to disk]
  • Re-refined 4um9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UM9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4um9_F] [4um9_C] [4um9] [4um9_D] [4um9_A] [4um9_E] [4um9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UM9: [EGF_like] [INB] [Int_alpha] [PSI] [VWA ] by SMART
    • Other resources with information on 4UM9
  • Community annotation for 4UM9 at PDBWiki (http://pdbwiki.org)

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