4URZ The crystal structure of H-Ras and SOS in complex with ligands date
authors Winter, J.J.G., Anderson, M., Blades, K., Brassington, C., Breeze, A.L., Chresta, C., Embrey, K., Fairley, G., Faulder, P., Finlay, M.R.V., Kettle, J.G., Nowak, T., Overman, R., Patel, S.J., Perkins, P., Spadola, L., Tart, J., Tucker, J., Wrigley, G.
compound source
symmetry
R_factor
R_Free 0.2124
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.24
ligand VJP enzyme
Gene
Ontology
ChainFunctionProcessComponent
R


S


Primary referenceSmall Molecule Binding Sites on the Ras:SOS Complex Can Be Exploited for Inhibition of Ras Activation., Winter JJ, Anderson M, Blades K, Brassington C, Breeze AL, Chresta C, Embrey K, Fairley G, Faulder P, Finlay MR, Kettle JG, Nowak T, Overman R, Patel SJ, Perkins P, Spadola L, Tart J, Tucker JA, Wrigley G, J Med Chem. 2015 Feb 26. PMID:25695162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4urz.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4URZ
  • CSU: Contacts of Structural Units for 4URZ
  • Structure Factors (925 Kb)
  • Retrieve 4URZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4URZ from S2C, [Save to disk]
  • Re-refined 4urz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4URZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4URZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4URZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4urz_R] [4urz] [4urz_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4URZ: [RAS] [RasGEF] [RasGEFN ] by SMART
    • Other resources with information on 4URZ
  • Community annotation for 4URZ at PDBWiki (http://pdbwiki.org)

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