4UVM In meso crystal structure of the POT family transporter PepTSo date
authors Lyons, J.A., Solcan, N., Caffrey, M., Newstead, S.
compound source
symmetry
R_factor
R_Free 0.2580
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand 78M, 78N enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGating topology of the proton-coupled oligopeptide symporters., Fowler PW, Orwick-Rydmark M, Radestock S, Solcan N, Dijkman PM, Lyons JA, Kwok J, Caffrey M, Watts A, Forrest LR, Newstead S, Structure. 2015 Feb 3;23(2):290-301. doi: 10.1016/j.str.2014.12.012. PMID:25651061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4uvm.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4UVM
  • CSU: Contacts of Structural Units for 4UVM
  • Structure Factors (310 Kb)
  • Retrieve 4UVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UVM from S2C, [Save to disk]
  • Re-refined 4uvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UVM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uvm] [4uvm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UVM
  • Community annotation for 4UVM at PDBWiki (http://pdbwiki.org)

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