4UWD HIF prolyl hydroxylase 2 (PHD2/ EGLN1) D315E VARIANT in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) date
authors Chowdhury, R., Tarhonskaya, H., Schofield, C.J.
compound source
symmetry
R_factor
R_Free 0.1735
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand MN, UN9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInvestigating the contribution of the active site environment to the slow reaction of hypoxia-inducible factor prolyl hydroxylase domain 2 with oxygen., Tarhonskaya H, Chowdhury R, Leung IK, Loik ND, McCullagh JS, Claridge TD, Schofield CJ, Flashman E, Biochem J. 2014 Aug 14. PMID:25120187
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4uwd.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 4UWD
  • CSU: Contacts of Structural Units for 4UWD
  • Structure Factors (1638 Kb)
  • Retrieve 4UWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UWD from S2C, [Save to disk]
  • Re-refined 4uwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UWD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UWD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uwd] [4uwd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UWD: [P4Hc ] by SMART
    • Other resources with information on 4UWD
  • Community annotation for 4UWD at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science