4V11 Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84 date
authors Zhang, N., Gordon, S.L., Fritsch, M.J., Esoof, N., Campbell, D., Gourlay, R., Velupillai, S., Macartney, T., Peggie, M., vanAalten, D.M.F., Cousin, M.A., Alessi, D.R.
compound source
symmetry
R_factor
R_Free 0.1956
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CA, GOL, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhosphorylation of Synaptic Vesicle Protein 2A at Thr84 by Casein Kinase 1 Family Kinases Controls the Specific Retrieval of Synaptotagmin-1., Zhang N, Gordon SL, Fritsch MJ, Esoof N, Campbell DG, Gourlay R, Velupillai S, Macartney T, Peggie M, van Aalten DM, Cousin MA, Alessi DR, J Neurosci. 2015 Feb 11;35(6):2492-507. doi: 10.1523/JNEUROSCI.4248-14.2015. PMID:25673844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4v11.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4V11
  • CSU: Contacts of Structural Units for 4V11
  • Structure Factors (253 Kb)
  • Retrieve 4V11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V11 from S2C, [Save to disk]
  • Re-refined 4v11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4V11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V11
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V11, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v11_B] [4v11] [4v11_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4V11: [C2 ] by SMART
    • Other resources with information on 4V11
  • Community annotation for 4V11 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science