4V1N	Architecture of the RNA polymerase II-Mediator core transcription initiation complex	date
authors	Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	7.80
ligand	MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym... B RNA-directed 5'-3' RNA polym... C RNA-directed 5'-3' RNA polym... D RNA-directed 5'-3' RNA polym... E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... G RNA-directed 5'-3' RNA polym... H RNA-directed 5'-3' RNA polym... I RNA-directed 5'-3' RNA polym... J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K RNA-directed 5'-3' RNA polym... L RNA-directed 5'-3' RNA polym... M O Q R
Primary reference	Architecture of the RNA polymerase II-Mediator core initiation complex., Plaschka C, Lariviere L, Wenzeck L, Seizl M, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P, Nature. 2015 Feb 4. doi: 10.1038/nature14229. PMID:25652824

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk] Biological Unit Coordinates (4v1n.pdb1.gz) 775 Kb LPC: Ligand-Protein Contacts for 4V1N CSU: Contacts of Structural Units for 4V1N Retrieve 4V1N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V1N from S2C, [Save to disk]

View 4V1N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V1N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4V1N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v1n_D] [4v1n_P] [4v1n_L] [4v1n_O] [4v1n_B] [4v1n_J] [4v1n_G] [4v1n_Q] [4v1n_C] [4v1n_T] [4v1n_M] [4v1n_I] [4v1n_N] [4v1n_F] [4v1n] [4v1n_E] [4v1n_H] [4v1n_A] [4v1n_K] [4v1n_R] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V1N: [CYCLIN] [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [S1] [ZnF_C2C2 ] by SMART

Other resources with information on 4V1N

Community annotation for 4V1N at PDBWiki (http://pdbwiki.org)

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