4V3L RNF38-UB-UbcH5B-Ub complex date
authors Buetow, L., Gabrielsen, M., Anthony, N.G., Dou, H., Patel, A., Aitkenhead, H., Sibbet, G.J., Smith, B.O., Huang, D.T.
compound source
symmetry
R_factor
R_Free 0.1926
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.53
ligand EDO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActivation of a Primed RING E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin., Buetow L, Gabrielsen M, Anthony NG, Dou H, Patel A, Aitkenhead H, Sibbet GJ, Smith BO, Huang DT, Mol Cell. 2015 Mar 18. pii: S1097-2765(15)00131-8. doi:, 10.1016/j.molcel.2015.02.017. PMID:25801170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4v3l.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4V3L
  • CSU: Contacts of Structural Units for 4V3L
  • Structure Factors (3569 Kb)
  • Retrieve 4V3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V3L from S2C, [Save to disk]
  • Re-refined 4v3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4V3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V3L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V3L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v3l_C] [4v3l_B] [4v3l_D] [4v3l_A] [4v3l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V3L: [RING] [UBCc] [UBQ ] by SMART
  • Other resources with information on 4V3L
  • Community annotation for 4V3L at PDBWiki (http://pdbwiki.org)

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