4W5V Crystal structure of Human SUMO E2-conjugating enzyme (Ubc9) in complex with E1-activating enzyme (Uba2) ubiquitin fold domain (Ufd) date
authors Boucher, L.E., Reiter, K.H., Matunis, M.J., Bosch, J.
compound source
symmetry
R_factor
R_Free 0.2828
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand FMT, GOL, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • SUMO conjugating enzyme acti...


  • B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (4w5v.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4W5V
  • CSU: Contacts of Structural Units for 4W5V
  • Structure Factors (175 Kb)
  • Retrieve 4W5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W5V from S2C, [Save to disk]
  • Re-refined 4w5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4W5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4W5V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w5v_A] [4w5v] [4w5v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4W5V: [UBCc ] by SMART
  • Other resources with information on 4W5V
  • Community annotation for 4W5V at PDBWiki (http://pdbwiki.org)

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