4W8E Structure of MST3 with a pyrrolopyrimidine inhibitor (PF-06645342) date
authors Jasti, J., Song, X., Griffor, M., Kurumbail, R.G.
compound source
symmetry
R_factor
R_Free 0.2125
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.79
ligand 3JB, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and preclinical profiling of 3-[4-(morpholin-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile (PF-06447475), a highly potent, selective, brain penetrant, and in vivo active LRRK2 kinase inhibitor., Henderson JL, Kormos BL, Hayward MM, Coffman KJ, Jasti J, Kurumbail RG, Wager TT, Verhoest PR, Noell GS, Chen Y, Needle E, Berger Z, Steyn SJ, Houle C, Hirst WD, Galatsis P, J Med Chem. 2015 Jan 8;58(1):419-32. doi: 10.1021/jm5014055. Epub 2014 Nov 17. PMID:25353650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4w8e.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4W8E
  • CSU: Contacts of Structural Units for 4W8E
  • Structure Factors (1393 Kb)
  • Retrieve 4W8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W8E from S2C, [Save to disk]
  • Re-refined 4w8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4W8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4W8E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4W8E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w8e] [4w8e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4W8E: [S_TKc ] by SMART
  • Other resources with information on 4W8E
  • Community annotation for 4W8E at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science