4WCI Crystal structure of the 1st SH3 domain from human CD2AP (CMS) in complex with a proline-rich peptide (aa 378-393) from human RIN3 date
authors Rouka, E., Simister, P.C., Janning, M., Kirsch, K.H., Krojer, T., Knapp, S., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Feller, S.M., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand SO4 enzyme
Primary referenceDifferential Recognition Preferences of the Three Src Homology 3 (SH3) Domains from the Adaptor CD2-associated Protein (CD2AP) and Direct Association with Ras and Rab Interactor 3 (RIN3)., Rouka E, Simister PC, Janning M, Kumbrink J, Konstantinou T, Muniz JR, Joshi D, O'Reilly N, Volkmer R, Ritter B, Knapp S, von Delft F, Kirsch KH, Feller SM, J Biol Chem. 2015 Oct 16;290(42):25275-92. doi: 10.1074/jbc.M115.637207. Epub, 2015 Aug 20. PMID:26296892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4wci.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (4wci.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (4wci.pdb3.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 4WCI
  • CSU: Contacts of Structural Units for 4WCI
  • Structure Factors (520 Kb)
  • Retrieve 4WCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WCI from S2C, [Save to disk]
  • Re-refined 4wci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WCI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wci_A] [4wci_F] [4wci_D] [4wci_C] [4wci_B] [4wci] [4wci_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WCI: [SH3 ] by SMART
    • Other resources with information on 4WCI
  • Community annotation for 4WCI at PDBWiki (http://pdbwiki.org)

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