4WDX 17beta-HSD5 in complex with [4-(2-hydroxyethyl)piperidin-1-yl](5-methyl-1H-indol-2-yl)methanone date
authors Amano, Y., Yamaguchi, T.
compound source
symmetry
R_factor
R_Free 0.24879
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.64
ligand NAP, WDX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • NADP-retinol dehydrogenase a...


  • Primary referenceStructures of complexes of type 5 17beta-hydroxysteroid dehydrogenase with structurally diverse inhibitors: insights into the conformational changes upon inhibitor binding., Amano Y, Yamaguchi T, Niimi T, Sakashita H, Acta Crystallogr D Biol Crystallogr. 2015 Apr;71(Pt 4):918-27. doi:, 10.1107/S1399004715002175. Epub 2015 Mar 27. PMID:25849402
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (4wdx.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (4wdx.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4WDX
  • CSU: Contacts of Structural Units for 4WDX
  • Structure Factors (1407 Kb)
  • Retrieve 4WDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WDX from S2C, [Save to disk]
  • Re-refined 4wdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WDX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WDX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wdx] [4wdx_B] [4wdx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WDX
  • Community annotation for 4WDX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science