4WIP DIX domain of human Dvl2 date
authors Fiedler, M., Bienz, M., Madrzak, J., Chin, J.W.
compound source
symmetry
R_factor
R_Free 0.24816
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.69
ligand 1PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceUbiquitination of the Dishevelled DIX domain blocks its head-to-tail polymerization., Madrzak J, Fiedler M, Johnson CM, Ewan R, Knebel A, Bienz M, Chin JW, Nat Commun. 2015 Apr 24;6:6718. doi: 10.1038/ncomms7718. PMID:25907794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4wip.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 4WIP
  • CSU: Contacts of Structural Units for 4WIP
  • Structure Factors (910 Kb)
  • Retrieve 4WIP in mmCIF format [Save to disk]
  • Re-refined 4wip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WIP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WIP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wip_C] [4wip] [4wip_B] [4wip_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WIP: [DAX ] by SMART
  • Other resources with information on 4WIP
  • Community annotation for 4WIP at PDBWiki (http://pdbwiki.org)

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