4WVL Structure-Guided DOT1L Probe Optimization by Label-Free Ligand Displacement date
authors Xu, X., Dhe-Paganon, S., Blacklow, S.
compound source
symmetry
R_factor
R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.41
ligand 3US, EDO, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-Guided DOT1L Probe Optimization by Label-Free Ligand Displacement., Yi JS, Fderation AJ, Qi J, Dhe-Paganon S, Hadler M, Xu X, St Pierre R, Varca AC, Wu L, Marineau JJ, Smith WB, Souza A, Chory EJ, Armstrong SA, Bradner JE, ACS Chem Biol. 2014 Nov 14. PMID:25397901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4wvl.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4WVL
  • CSU: Contacts of Structural Units for 4WVL
  • Structure Factors (275 Kb)
  • Retrieve 4WVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WVL from S2C, [Save to disk]
  • Re-refined 4wvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wvl_A] [4wvl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WVL
  • Community annotation for 4WVL at PDBWiki (http://pdbwiki.org)

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