4WVS Crystal structure of XIAP-BIR2 domain complexed with (S)-3-(4-methoxyphenyl)-2-((S)-2-((S)-1-((S)-2-((S)-2-(methylamino)propanamido)pent-4-ynoyl)pyrrolidine-2-carboxamido)-3-phenylpropanamido)propanoic acid date
authors Pokross, M.E.
compound source
symmetry
R_factor
R_Free 0.2316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.09
ligand 4LZ, GOL, LPH, MAA, SO4, ZN enzyme
Primary referenceThe discovery of macrocyclic XIAP antagonists from a DNA-programmed chemistry library, and their optimization to give lead compounds with in vivo antitumor activity., Seigal BA, Connors WH, Fraley A, Borzilleri RM, Carter PH, Emanuel SL, Fargnoli J, Kim KS, Lei M, Naglich JG, Pokross ME, Posy SL, Shen H, Surti N, Talbott R, Zhang Y, Terrett N, J Med Chem. 2015 Feb 19. PMID:25695766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4wvs.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4WVS
  • CSU: Contacts of Structural Units for 4WVS
  • Structure Factors (107 Kb)
  • Retrieve 4WVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WVS from S2C, [Save to disk]
  • Re-refined 4wvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WVS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WVS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wvs_B] [4wvs] [4wvs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WVS: [BIR ] by SMART
  • Other resources with information on 4WVS
  • Community annotation for 4WVS at PDBWiki (http://pdbwiki.org)

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